Journal Article
Publication Abstract: 

Hala Alshamlan, Ghada Badr, and Yousef Alohali. ABC-SVM: Articial bee colony and SVM method for microarray gene selection and multi class cancer classication. To appear in International Journal of Machine Learning and Computing, 2015. (EI Index)

Hala Alshamlan, Ghada Badr, and Yousef Alohali. MRMR-ABC: A hybrid gene selection algorithm for microarray cancer classification. BioMed Research International, Vol. 2015, 2015. (ISI Index, IF: 2.71)

Hala Alshamlan, Ghada Badr, and Yousef Alohali, Y. A. Genetic bee colony (GBC) algorithm: A new gene selection method for microarray cancer classification. Computational biology and chemistry Vol. 56: 49– 60, 2015. (ISI Index, IF: 1.60)

Isra Al-Turaiki, Ghada Badr, and Hassan Mathkour. TrieAMD: A Scalable and efficient Apriori Motif Discovery Approach. International Journal of Data Mining in Bioinformatics Vol. 13, No. 1, 13-30, 2015. (ISI: IF - 0.681)

Ghada Badr, Isra Al-Turaiki, Marcel Turcotte, and Hassan Mathkour IncMD: Incremental Trie-Based Structural Motif Discovery Algorithm. Journal of Bioinformatics and Computational Biology Vol. 12, No. 5, 29 pages, 2014. (ISI: IF - 0.931)

Hala Alshamlan, Ghada Badr, and Yousef Alohali, The Performance of Bio-Inspired Evolutionary Gene Selection Methods for Cancer Classification Using Microarrays Gene Expression Profile, International Journal of Bioscience, Biochemistry and Bioinformatics (IJBBB), Vol. 4, No. 3, 166-170, May 2014.

Ebtisam S. Al-Jaloud, Haifaa A. Al-Aqel and Ghada H. Badr. Comparative Performance Evaluation of Heap-Sort and Quick-Sort Algorithms. International Journal of Computing Academic Research (IJCAR). United Arab Emirates, 3(2):39-57, April, 2014.

Ghada Badr, Isra Al-Turaiki, and Hassan Mathkour. Classification and Assessment Tools for Structural Motif Discovery Algorithms. Classification and assessment tools for structural motif discovery algorithms. BMC Bioinformatics, 14(Suppl 9):S4, 2013. (ISI: IF – 2.67)

Ghada Badr, Krister M. Swenson, David Sankoff. Listing all Parsimonious Reversal Sequences: New Algorithms and Perspectives. Journal of Computational Biology, 18(9): 1201–1210, 2011. (ISI: IF - 1.546). .pdf

Krister Swenson, Ghada Badr, and David Sankoff. Listing All Sorting Reversals in Quadratic Time. Algorithms for Molecular Biology, 6(11), 2011. (ISI: IF – 1.4). 11.pdf

Ghada Badr and B. John Oommen. A Novel Look-Ahead Optimization Strategy for Trie-Based Approximate String Matching, Pattern Analysis and Applications Journal (PAA), 9(2-3):77-187, October 2006 (ISI: IF - 0.739).

B. John Oommen and Ghada Badr. Breadth-First Search Strategies for Trie-Based Syntactic Pattern Recognition. Pattern Analysis and Applications Journal (PAA) Journal. 10(1):1-13, February, 2007. (ISI: IF - 0.739).

Ghada Badr and B. John Oommen. On Optimizing Syntactic Pattern Recognition using Tries and AI-based Heuristic Search Strategies. To appear in IEEE Transactions on Systems, Man and Cybernetics, Part B. 36(3):611 – 622, June 2006. (ISI: IF - 2.123).

Ghada Badr and B. John Oommen. Self-Adjusting of Ternary Search Tries Using Conditional Rotations and Randomized Heuristics. The Computer Journal. 48(2): 200-219, March 2005. Cited as being Most Meritorious, was a winner of one of the Wilkes Best Paper Awards in 2006. The Computer Journal is the flagship journal of the British Computer Society. (ISI: IF - 0.943)

Journals In submission or preparation

Ghada Badr and Hessah Arraqibah. Extended Component-Based Motif Localization for Interacting RNA Structures. In submission for publication in Algorithms in Bioinformatics and Molecular Biology.

Ghada Badr and Arwa Al-Turki. CompPSA: A Component-Based Pairwise RNA Secondary Structure Alignment Algorithm. In submission for publication in International Journal of Data Mining in Bioinformatics.

Ghada Badr, Afnan AlGobail, Amal AlHomrani, Hanadi AlMutairi, and Manal AlMutery: Predicting Students’ Performance In Programming Course Using CBA Algorithm: A Case Study In KSU Mathematics Department. In Preparation.